RegulonDB RegulonDB 11.1: Operon Form
   

rnhA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: rnhA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: rnhA
Gene(s): rnhA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified
Reference(s): [1] Nomura T., et al., 1985
Promoter
Name: rnhAp
+1: 236041
Distance from start of the gene: 39
Sequence: tcgagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgtcGttttacagttcgattcaatt
Evidence: [COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[RS-EPT-CBR]
Reference(s): [1] Nomura T., et al., 1985
[2] Salgado H, et al., 2012


Evidence    

 [COMP-HINF-POSITIONAL-IDENTIFICATION] Human inference of promoter position

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Nomura T., Aiba H., Ishihama A., 1985, Transcriptional organization of the convergent overlapping dnaQ-rnh genes of Escherichia coli., J Biol Chem 260(11):7122-5

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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