RegulonDB RegulonDB 10.9: Operon Form
   

cstA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: cstA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: cstA
Synonym(s): cst-2
Gene(s): cstA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [1] Schultz JE., et al., 1991
Promoter
Name: cstAp1
+1: 629855
Distance from start of the gene: 39
Sequence: tcaactccgatttacatggttgctgtgttgttaaattgtacaaagatgttatagaaacaaAatgtaacatctctatggaca
Evidence: [TIM]
Reference(s): [1] Schultz JE., et al., 1991
Terminator(s)
Type: rho-independent
Sequence: ttagtgcccaGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTgaccgagcgc
Reference(s): [1] Schultz JE., et al., 1991
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP activator cstAp1 629755 629776 -89.5 actcggttaaCGGAGTGATCGAGTTAACATTGTtaagttaaat nd [GEA], [SM] [1], [2], [3]


Transcription unit       
Name: cstA
Synonym(s): cst-2
Gene(s): cstA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [1] Schultz JE., et al., 1991
Promoter
Name: cstAp2
+1: 629864
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 30
Sequence: atttacatggttgctgtgttgttaaattgtacaaagatgttatagaaacaaaatgtaacaTctctatggacacgcacacgg
                      -35                        -10        +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [4] Huerta AM., et al., 2003
[1] Schultz JE., et al., 1991
Terminator(s)
Type: rho-independent
Sequence: ttagtgcccaGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTgaccgagcgc
Reference(s): [1] Schultz JE., et al., 1991


Transcription unit       
Name: cstA
Synonym(s): cst-2
Gene(s): cstA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [1] Schultz JE., et al., 1991
Promoter
Name: cstAp3
+1: 629873
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 21
Sequence: gttgctgtgttgttaaattgtacaaagatgttatagaaacaaaatgtaacatctctatggAcacgcacacggataacaact
                    -35                        -10          +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [4] Huerta AM., et al., 2003
[1] Schultz JE., et al., 1991
Terminator(s)
Type: rho-independent
Sequence: ttagtgcccaGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTgaccgagcgc
Reference(s): [1] Schultz JE., et al., 1991





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