RegulonDB RegulonDB 10.9: Operon Form
   

csiE operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: csiE
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: csiE
Gene(s): csiE   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Marschall C., et al., 1995
Promoter
Name: csiEp2
+1: 2665401
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 34
Sequence: cttgccaacatttctgatgattagcattcccttcgccatttccttgagcaaactttagctAttcttatcaattatgcttat
                           -35               -10            +1                   
Evidence: [HIPP]
[ICWHO]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Marschall C., et al., 1995
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP activator csiEp2 2665348 2665369 -42.5 acgcttgccaACATTTCTGATGATTAGCATTCCcttcgccatt nd [GEA] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd H-NS activator csiEp2 nd nd nd nd nd [BPP], [GEA], [IGI] [3]


Transcription unit          
Name: csiE
Gene(s): csiE   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Marschall C., et al., 1995
Promoter
Name: csiEp
+1: 2665401
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 34
Sequence: cttgccaacatttctgatgattagcattcccttcgccatttccttgagcaaactttagctAttcttatcaattatgcttat
                           -35                     -10      +1                   
Evidence: [HIPP]
[ICWHO]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Marschall C., et al., 1995
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP activator csiEp 2665348 2665369 -42.5 acgcttgccaACATTTCTGATGATTAGCATTCCcttcgccatt nd [GEA] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd H-NS activator csiEp nd nd nd nd nd [BPP], [GEA], [IGI] [3]





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