RegulonDB RegulonDB 10.10: Operon Form
   

csiE operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: csiE
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: csiE
Gene(s): csiE   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Marschall C., et al., 1995
Promoter
Name: csiEp
+1: 2665401
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 34
Sequence: cttgccaacatttctgatgattagcattcccttcgccatttccttgagcaaactttagctAttcttatcaattatgcttat
                           -35                     -10      +1                   
Evidence: [APIORCISFBSCS]
[HIPP]
[ICWHO]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Marschall C., et al., 1995
TF binding sites (TFBSs)
[CRP,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cyclic-AMP activator csiEp 2665348 2665369 -42.5 acgcttgccaACATTTCTGATGATTAGCATTCccttcgccat nd [GEA] [1]
[H-NS,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd H-NS activator csiEp nd nd nd nd nd [GEA], [BPP] [3]


Transcription unit          
Name: csiE
Gene(s): csiE   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Marschall C., et al., 1995
Promoter
Name: csiEp2
+1: 2665401
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 34
Sequence: cttgccaacatttctgatgattagcattcccttcgccatttccttgagcaaactttagctAttcttatcaattatgcttat
                           -35               -10            +1                   
Evidence: [APIORCISFBSCS]
[HIPP]
[ICWHO]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Marschall C., et al., 1995
TF binding sites (TFBSs)
[CRP,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cyclic-AMP activator csiEp2 2665348 2665369 -42.5 acgcttgccaACATTTCTGATGATTAGCATTCccttcgccat nd [GEA] [1]
[H-NS,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd H-NS activator csiEp2 nd nd nd nd nd [GEA], [BPP] [3]


Evidence    

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [HIPP] Human inference of promoter position

 [ICWHO] Inferred computationally without human oversight

 [TIM] Transcription initiation mapping

 [GEA] Gene expression analysis

 [BPP] Binding of purified proteins


Reference(s)    

 [1] Marschall C., Hengge-Aronis R., 1995, Regulatory characteristics and promoter analysis of csiE, a stationary phase-inducible gene under the control of sigma S and the cAMP-CRP complex in Escherichia coli., Mol Microbiol 18(1):175-84

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [3] Barth M., Marschall C., Muffler A., Fischer D., Hengge-Aronis R., 1995, Role for the histone-like protein H-NS in growth phase-dependent and osmotic regulation of sigma S and many sigma S-dependent genes in Escherichia coli., J Bacteriol 177(12):3455-64

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