RegulonDB RegulonDB 11.1: Operon Form
   

znuA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: znuA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: znuA
Gene(s): znuA   Genome Browser M3D Gene expression COLOMBOS
Note(s): The znuA gene is upregulated when E. coli is exposed to some biocides Merchel Piovesan Pereira B, Wang X, Tagkopoulos I,2020.
Evidence: [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified
Reference(s): [1] Patzer SI., et al., 1998
Promoter
Name: znuAp
+1: 1942661
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 78
Sequence: gaggacgcggcgttggccaaaagaaaccgagacattttccagggaaaccagacttgtcatGttaattttagtcttgcagta
                                -35                   -10   +1                   
Evidence: [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
Reference(s): [2] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote OxyR activator znuAp 1942598 1942614 55.5 atatcacactTCTCATATTCATTACGAttattggtcg nd [COMP-HINF], [EXP-CHIP-EXO-MANUAL], [EXP-IEP-RNA-SEQ], [COMP-HINF], [EXP-CHIP-EXO-MANUAL] S [6]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote Zur-Zn2+ repressor znuAp 1942613 1942636 38.0 gcagtagtcaTGAAATGTTATAATATCACACTTCtcatattcat nd [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [1], [3], [4], [5]





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