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Name: | ynfEFGH-dmsD | |||||||||
Synonym(s): | ynfEFGHI | |||||||||
Gene(s): | ynfE, ynfF, ynfG, ynfH, dmsD Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | These genes are contiguous and their products participate in the same biological process (dimethyl sulfoxide reduction); therefore, the ynfEFGH-dmsD operon was inferred Lubitz SP,2003 |
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Evidence: | [PAGTSBP] Products of adjacent genes in the same biological process | |||||||||
Reference(s): | [1] Lubitz SP., et al., 2003 | |||||||||
Promoter | ||||||||||
Name: | ynfEp2 | |||||||||
+1: | 1658003 | |||||||||
Sigma Factor: | Sigma38 Sigmulon | |||||||||
Distance from start of the gene: | 66 | |||||||||
Sequence: |
tcatacccttctattgatatggattaataattcttaacccaaaatgggtagactccctctAttgttagcgcgctaaatatt -35 -10 +1 |
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Evidence: |
[AIPP] [ICWHO] [IHBCE] [RPF] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [3] Kang Y., et al., 2005 [4] Maciag A., et al., 2011 [5] Xu M., et al., 2009 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NarL-phosphorylated | repressor | ynfEp2 | 1657977 | 1657983 | -23.0 | taataattctTAACCCAaaatgggtag | nd | [AIBSCS], [BPP] | [5] |
proximal | NarL-phosphorylated | repressor | ynfEp2 | 1657986 | 1657992 | -14.0 | ttaacccaaaATGGGTAgactccctct | nd | [AIBSCS], [BPP] | [5] |
Name: | ynfEFGH-dmsD | |||||||||
Synonym(s): | ynfEFGHI | |||||||||
Gene(s): | ynfE, ynfF, ynfG, ynfH, dmsD Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | These genes are contiguous and their products participate in the same biological process (dimethyl sulfoxide reduction); therefore, the ynfEFGH-dmsD operon was inferred Lubitz SP,2003 |
|||||||||
Evidence: | [PAGTSBP] Products of adjacent genes in the same biological process | |||||||||
Reference(s): | [1] Lubitz SP., et al., 2003 | |||||||||
Promoter | ||||||||||
Name: | ynfEp | |||||||||
+1: | 1658003 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 66 | |||||||||
Sequence: |
tcatacccttctattgatatggattaataattcttaacccaaaatgggtagactccctctAttgttagcgcgctaaatatt -35 -10 +1 |
|||||||||
Evidence: |
[AIPP] [ICWHO] [IHBCE] [RPF] |
|||||||||
Reference(s): |
[2] Huerta AM., et al., 2003 [3] Kang Y., et al., 2005 [4] Maciag A., et al., 2011 [5] Xu M., et al., 2009 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NarL-phosphorylated | repressor | ynfEp | 1657977 | 1657983 | -23.0 | taataattctTAACCCAaaatgggtag | nd | [AIBSCS], [BPP] | [5] |
proximal | NarL-phosphorylated | repressor | ynfEp | 1657986 | 1657992 | -14.0 | ttaacccaaaATGGGTAgactccctct | nd | [AIBSCS], [BPP] | [5] |
Reference(s) |
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