Name: |
hcaR |
Gene(s): |
hcaR
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
The hcaR gene appears to be negatively regulated by ArcA in an indirect way. The regulatory region of the hcaR gene has a putative ArcA-binding site, but when it is partially deleted, the effect of ArcA on the gene is not lost Turlin E,2005. |
Promoter |
|
Name: |
hcaRp |
+1: |
2668964 |
Distance from start of the gene: |
68
|
Sequence: |
aatcctgaaagataagatgtattgaccttctatttttgtgccataaggatgttgctggttGgttgctaatatgtgaaatag
|
Note(s): |
The hcaRp promoter has a weak -10 region (AAGGAT) and a good -35 region (TTGACC) Turlin E,2005. |
Evidence: |
[TIM]
|
Reference(s): |
[1] Turlin E., et al., 2005
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
HcaR |
repressor |
hcaRp |
2668934
|
2668946
|
25.0
|
atatgtgaaaTAGTTAATTTCTAccagctgaga
|
[GEA]
|
[1]
|
sRNA |
TU Regulated |
Function |
Binding Sites |
Regulatory Mechanism |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
PosLeft |
PosRight |
Target sequence (mRNA) |
e14 prophage; small regulatory RNA C0293
|
hcaR
|
repressor
|
2668895
|
2668902
|
AUCACCUU
|
nd
|
[IEP], [SM]
|
[2]
|