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Name: | mdtABCD-baeSR | ||||||||||
Gene(s): | mdtA, mdtB, mdtC, mdtD, baeS, baeR Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined [EXP-IEP-COREGULATION] Inferred through co-regulation |
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Reference(s): | [1] Nagakubo S., et al., 2002 | ||||||||||
Promoter | |||||||||||
Name: | mdtAp | ||||||||||
+1: | 2153979 | ||||||||||
Sigma Factor: | Sigma38 Sigmulon | ||||||||||
Distance from start of the gene: | 37 | ||||||||||
Sequence: |
ccagacagtgtttcataattcctccatttttctcccttattggctggctacactagtatcAttccgcgaaacgtttcagga -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-AINF-POSITIONAL-IDENTIFICATION] |
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Reference(s): |
[2] Gama-Castro S., et al., 2008 [3] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | BaeR-phosphorylated | activator | mdtAp | 2153942 | 2153961 | -27.5 | cataattcctCCATTTTTCTCCCTTATTGGctggctacac | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [4], [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | CpxR-phosphorylated | activator | mdtAp | 2153843 | 2153859 | -128.5 | cagtctatcgCTAACGCGTAGATAAAAtagtttcctg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [IC], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [IC] | W | [4] |
proximal | CpxR-phosphorylated | activator | mdtAp | 2153906 | 2153920 | -66.5 | atgtgcccgtCATTCAGACGATTCCagacagtgtt | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [IC], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [IC] | W | [4] |
Name: | baeSR |
Gene(s): | baeS, baeR Genome Browser M3D Gene expression COLOMBOS |
Reference(s): | [6] Nagasawa S., et al., 1993 |
Reference(s) |
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