RegulonDB RegulonDB 11.1: Operon Form
   

slyB operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: slyB
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: slyB
Gene(s): slyB   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: slyBp2
+1: 1719748
Distance from start of the gene: 128
Sequence: gttggtagtaaaacattatcttcaaatcaataatcatcatgaatgttttgtttataattgGttgatcctactttcattatg
Evidence: [EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [1] Minagawa S., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal PhoP-phosphorylated repressor slyBp2 1719736 1719752 -4.0 atgaatgtttTGTTTATAATTGGTTGAtcctactttc nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] W [1]


Transcription unit          
Name: slyB
Gene(s): slyB   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: slyBp1
+1: 1719777
Distance from start of the gene: 99
Sequence: ataatcatcatgaatgttttgtttataattggttgatcctactttcattatgatttgctcAtatttggtagaacatgtaac
Evidence: [EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[RS-EPT-CBR]
Reference(s): [1] Minagawa S., et al., 2003
[2] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal PhoP-phosphorylated activator slyBp1 1719736 1719752 -33.0 atgaatgtttTGTTTATAATTGGTTGAtcctactttc nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] W [1]





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