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Name: | hemL |
Gene(s): | hemL Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [COMP-AINF-SINGLE-DIRECTON] Automated inference that a single-gene directon is a transcription unit |
Promoter | |
Name: | hemLp1 |
+1: | 174902 |
Sigma Factor: | Sigma28 Sigmulon |
Distance from start of the gene: | 20 |
Sequence: |
gatgtttgacgagtatttaacttgttatgaataacatagaatagcagccattcactttttCtacgaatcaggaaccctcca -35 -10 +1 |
Note(s): | The sequence of this promoter has been defined, by computational analyses, from the consensus sequence of the σ28 (σF) promoters: TAAAGTTT in the -35 box and GCCGATAA in the -10 box Yu HH,2006. Thus, we assigned a putative transcription start site for this promoter based on the observation that the majority of the σ28 promoters, determined experimentally, present an important -10 motif (5'-CGA-3') at the positions -12 to -10 and a distance of 6 nucleotides between the transcription start site and the -10 box Yu HH, Di Russo EG, Rounds MA, Tan M,2006. Yu HH,2006. Park K,2001. |
Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IEP] |
Reference(s): |
[1] Huerta AM., et al., 2003 [2] Zhao K., et al., 2007 |
Name: | hemL | ||||||||||
Gene(s): | hemL Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [COMP-AINF-SINGLE-DIRECTON] Automated inference that a single-gene directon is a transcription unit | ||||||||||
Promoter | |||||||||||
Name: | hemLp | ||||||||||
+1: | 174921 | ||||||||||
Sigma Factor: | Sigma28 Sigmulon | ||||||||||
Distance from start of the gene: | 39 | ||||||||||
Sequence: |
gcaccagtacaagcagcctgatgtttgacgagtatttaacttgttatgaataacatagaaTagcagccattcactttttct -35 -10 +1 |
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Evidence: |
[COMP-AINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [EXP-IEP] |
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Reference(s): |
[1] Huerta AM., et al., 2003 [3] Minagawa S., et al., 2003 [2] Zhao K., et al., 2007 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | PdhR | repressor | hemLp | 175078 | 175094 | -165.0 | aatgatcactTATTGGTCATACAAATAagatgacggc | nd | [COMP-AINF-SIMILAR-TO-CONSENSUS] | nd | [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | PhoP-phosphorylated | activator | hemLp | 174944 | 174960 | -31.0 | agcagcctgaTGTTTGACGAGTATTTAacttgttatg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [3] |
Name: | hemL |
Gene(s): | hemL Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [COMP-AINF-SINGLE-DIRECTON] Automated inference that a single-gene directon is a transcription unit |
Promoter | |
Name: | hemLp2 |
+1: | 174941 |
Sigma Factor: | Sigma28 Sigmulon |
Distance from start of the gene: | 59 |
Sequence: |
tactctaagaaatcaggattgcaccagtacaagcagcctgatgtttgacgagtatttaacTtgttatgaataacatagaat -35 -10 +1 |
Note(s): | The sequence of this promoter has been defined, by computational analyses, from the consensus sequence of the σ28 (σF) promoters: TAAAGTTT in the -35 box and GCCGATAA in the -10 box Yu HH,2006. Thus, we assigned a putative transcription start site for this promoter based on the observation that the majority of the σ28 promoters, determined experimentally, present an important -10 motif (5'-CGA-3') at the positions -12 to -10 and a distance of 6 nucleotides between the transcription start site and the -10 box Yu HH, Di Russo EG, Rounds MA, Tan M,2006. Yu HH,2006. Park K,2001. |
Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IEP] |
Reference(s): |
[1] Huerta AM., et al., 2003 [2] Zhao K., et al., 2007 |
Reference(s) |
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