RegulonDB RegulonDB 11.1: Operon Form

pheP operon and associated TUs in Escherichia coli K-12 genome

Name: pheP
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: pheP
Gene(s): pheP   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified
Reference(s): [1] Pi J., et al., 1991
Name: phePp
+1: 601929
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 30
Sequence: cccgtttaaccgtgtggattgtgtcttgcgacgatgggcactaaatgttaaaaggtgcccCtcaacaaaaaagacacacag
                          -35                    -10        +1                   
Evidence: [COMP-AINF]
Reference(s): [2] Huerta AM., et al., 2003
[1] Pi J., et al., 1991
Type: rho-independent
Reference(s): [1] Pi J., et al., 1991

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -8.4 601765 601803 ccgatgattgGCGGCATGATCACCGCACCTTTGCTGTCGCTGTTTATTatcccggcgg
  anti-terminator -11.5 601742 601781 aggtgatgagCCGGATTGCCGCGCCGATGATTGGCGGCATGATCACCGCacctttgctg
  anti-anti-terminator -18.9 601714 601757 attctgtgggGAACGGGGGCTGGTTCAGAGGTGATGAGCCGGATTGCCGCGCCgatgattggc
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"