RegulonDB RegulonDB 10.9: Operon Form
   

nudB-yebC-ruvC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: nudB-yebC-ruvC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: ruvC
Gene(s): ruvC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [1] Takahagi M., et al., 1991
Promoter
Name: ruvCp
+1: 1947439
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 63
Sequence: gtctgatcgatatgctggaagattgcgacgacgtgcaggaagtttaccataacggtgaaaTctctgatgaggtcgcagcga
                       -35                   -10            +1                   
Evidence: [HIPP]
[ICWHO]
Reference(s): [2] Huerta AM., et al., 2003
[3] Sharples GJ., et al., 1991
[1] Takahagi M., et al., 1991
Terminator(s)
Type: rho-independent
Sequence: tgcggagggaGTGGAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACttaacgcagt
Reference(s): [1] Takahagi M., et al., 1991


Transcription unit       
Name: yebC-ruvC
Gene(s): ruvC, yebC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [3] Sharples GJ., et al., 1991
[1] Takahagi M., et al., 1991
Promoter
Name: yebCp
+1: 1948185
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 34
Sequence: gcggcgctcactaagtcctggagcaaccggcaggcgattgaacagtttgtaattaacgctGcctgaacaggcagggctatc
                           -35                     -10      +1                   
Evidence: [HIPP]
[ICWHO]
Reference(s): [2] Huerta AM., et al., 2003
[3] Sharples GJ., et al., 1991
[1] Takahagi M., et al., 1991
Terminator(s)
Type: rho-independent
Sequence: tgcggagggaGTGGAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACttaacgcagt
Reference(s): [1] Takahagi M., et al., 1991


Transcription unit       
Name: nudB-yebC-ruvC
Gene(s): ruvC, yebC, nudB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [1] Takahagi M., et al., 1991
Promoter
Name: nudBp
+1: 1948674
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 42
Sequence: cgaaatcattcgcgttgcatcgaggcggcaactgagtgaactcccatgagcatagataacTatgtgaatgggatgagcgaa
                          -35                   -10         +1                   
Evidence: [HIPP]
[ICWHO]
Reference(s): [2] Huerta AM., et al., 2003
[1] Takahagi M., et al., 1991
Terminator(s)
Type: rho-independent
Sequence: tgcggagggaGTGGAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACttaacgcagt
Reference(s): [1] Takahagi M., et al., 1991


Evidence    

 [HIPP] Human inference of promoter position

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Takahagi M., Iwasaki H., Nakata A., Shinagawa H., 1991, Molecular analysis of the Escherichia coli ruvC gene, which encodes a Holliday junction-specific endonuclease., J Bacteriol 173(18):5747-53

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [3] Sharples GJ., Lloyd RG., 1991, Resolution of Holliday junctions in Escherichia coli: identification of the ruvC gene product as a 19-kilodalton protein., J Bacteriol 173(23):7711-5

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