RegulonDB RegulonDB 10.10: Operon Form

ydjM operon and associated TUs in Escherichia coli K-12 genome

Name: ydjM
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: ydjM
Gene(s): ydjM   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Fernandez De Henestrosa AR., et al., 2000
Name: ydjMp
+1: 1810170
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 41
Sequence: gattaatcgtcaatttaagagaaagagttacaccgtcaccacttccgtgcactgtataaaAatcctatactgtacgtatcg
                            -35                        -10  +1                   
Evidence: [AIPP]
Reference(s): [2] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal LexA repressor ydjMp 1810159 1810178 -1.5 cacttccgtgCACTGTATAAAAATCCTATActgtacgtat nd [GEA], [AIBSCS], [BPP] [1]
proximal LexA repressor ydjMp 1810177 1810196 17.5 aaaaatcctaTACTGTACGTATCGACAGTTtagtgagttt nd [GEA], [AIBSCS], [BPP] [1]

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -25.4 1810052 1810085 ggttaatgacCAGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTatctgaaatt
  anti-terminator -9.4 1810018 1810067 atcgctgacaGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCAGGGGCAGTGATCTcgctgcccct
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"