RegulonDB RegulonDB 11.1: Operon Form

ybfE operon and associated TUs in Escherichia coli K-12 genome

Name: ybfE
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: ybfE
Gene(s): ybfE   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Fernandez De Henestrosa AR., et al., 2000
Name: ybfEp
+1: 711939
Sigma Factor: Sigma32 Sigmulon
Distance from start of the gene: 41
Sequence: gcgcgtgggcgttggcgtgactcatcgcgctgatgtattatggcgcgctatccatccgggCagaggcctggctgattgttt
                                   -35                 -10  +1                   
Evidence: [COMP-AINF]
Reference(s): [2] Gama-Castro S., et al., 2008
[3] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal LexA repressor ybfEp 712015 712034 -85.5 tgattaacgcAACTGATTAAAAACCCAGCGtccgcgtcgc nd [COMP-AINF-SIMILAR-TO-CONSENSUS] nd [4]