RegulonDB RegulonDB 11.1: Operon Form
   

hokE operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: hokE
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: hokE
Gene(s): hokE   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Fernandez De Henestrosa AR., et al., 2000
Promoter
Name: hokEp
+1: 607731
Sigma Factor: Sigma24 Sigmulon
Distance from start of the gene: 105
Sequence: gaagggtaagataacggcgggtgcctgaagctttccggtttcaggtttactctgaggtctGgaaagatgaagccccaggag
                            -35                    -10      +1                   
Evidence: [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
Reference(s): [2] Gama-Castro S., et al., 2008
[3] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal LexA repressor hokEp 607640 607659 -81.5 aaacaggactCACTGTATAAATAAACAGCTattttgttga nd [COMP-AINF-SIMILAR-TO-CONSENSUS] nd [4]





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