RegulonDB RegulonDB 11.2: Operon Form

cho operon and associated TUs in Escherichia coli K-12 genome

Name: cho
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: cho
Synonym(s): ydjQ
Gene(s): cho   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Fernandez De Henestrosa AR., et al., 2000
Name: chop
+1: 1823492
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 23
Sequence: gtaacctttgtcatcgacccgcctcttttttaatcgcttcccgcctgttacactggatagAtaaccagcattcggagtcaa
                            -35                  -10        +1                   
Evidence: [COMP-AINF]
Reference(s): [2] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal LexA repressor chop 1823482 1823501 -0.5 ccgcctgttaCACTGGATAGATAACCAGCAttcggagtca nd [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS] nd [3], [4]