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| Operon |  |
|---|---|
| Name: | bdm-sra |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | sra |
| Gene(s): | sra Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | Global transcriptional regulators FIS, IHF, cAMP-CRP, and ppGpp directly or indirectly regulate positively the transcription of sra during the stationary phase, and the region between bp -455 and -325 from its ATG codon appears to be responsible for the action of these regulators, which do not interfere with sra expression in the exponential phase Izutsu K,2001. |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified |
| Reference(s): | [1] Izutsu K., et al., 2001 |
| Promoter | |
| Name: | srap |
| +1: | 1556046 |
| Sigma Factor: | Sigma38 Sigmulon |
| Distance from start of the gene: | 83 |
| Sequence: |
acgatcaattatgtggtcagtggccagcaccctacgctttaaggtgctatgcttgatcggCaacctaatttaggggtttag -35 -10 +1 |
| Evidence: |
[ICWHO] [TIM] |
| Reference(s): |
[2] Huerta AM., et al., 2003 [1] Izutsu K., et al., 2001 [3] Lacour S., et al., 2004 |
| Evidence: |
[GEA] Gene expression analysis [IEP] Inferred from expression pattern |
| Reference(s): |
[1] Izutsu K., et al., 2001 [4] Traxler MF., et al., 2008 |
| Name: | bdm-sra | |||||||||
| Gene(s): | sra, bdm Genome Browser M3D Gene expression COLOMBOS | |||||||||
| Note(s): | The expression of the gene bdm is increased when colicin (at 30 ng/ml) is added to the medium 23421615. | |||||||||
| Evidence: | [PM] Polar mutation | |||||||||
| Reference(s): | [5] Francez-Charlot A., et al., 2005 | |||||||||
| Promoter | ||||||||||
| Name: | bdmp | |||||||||
| +1: | 1556340 | |||||||||
| Distance from start of the gene: | 60 | |||||||||
| Sequence: |
aaaatcatcaaccaggactaatcttaacaacgaagcggcaaatatttgccatgctgaatgTgctttataaatctgcgatcc |
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| Evidence: | [TIM] | |||||||||
| Reference(s): | [5] Francez-Charlot A., et al., 2005 | |||||||||
| Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
|---|---|---|---|---|---|---|---|---|---|---|
| LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
| proximal | RcsB-Pasp56 | activator | bdmp | 1556375 | 1556388 | -41.5 | aaatcatcaaCCAGGACTAATCTTAacaacgaagc | nd | [BPP], [GEA] | [5] |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Translational |
| Strand: | reverse |
| Evidence: | [ICA] Inferred by computational analysis |
| Reference(s): | [6] Merino E, et al., 2005 |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -7.4 | 1555970 | 1555997 | ggcgatgttgTCCTTAAAACTAGCTACAGGATTGAGGagttaaaatg |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
| Reference(s) |
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|---|---|
[ICWHO] Inferred computationally without human oversight