RegulonDB RegulonDB 11.1: Operon Form

agp operon and associated TUs in Escherichia coli K-12 genome

Name: agp
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: agp
Gene(s): agp   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified
Reference(s): [1] Pradel E., et al., 1988
[2] Pradel E., et al., 1990
Name: agpp
+1: 1065559
Distance from start of the gene: 26
Sequence: acaagccattttgcgaacctgttcccggaaaaaagtcatatttctgtcacactctttagtGattgataacaaaagaggtgc
Reference(s): [2] Pradel E., et al., 1990
[3] Salgado H, et al., 2012
Type: rho-independent
Sequence: ataacagaaaACTCCCCCGCGAGAAGCGGGGGAGTcgctggttaa
Reference(s): [2] Pradel E., et al., 1990
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote CRP-cyclic-AMP activator agpp 1065316 1065338 -232.5 tgctaaaaacCATTGTTATTAGTCTCACACTTTtttattggta nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [4]

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -12.6 1065436 1065470 ggggctaatcAGGCATAGTTTGCGTCAAACCTTGCCTGTTTTTGaagatgtata
  anti-terminator -11.8 1065412 1065452 attatcagcgGCGTACGCGAGGCAGGGGCTAATCAGGCATAGTTTGCGTCaaaccttgcc
  anti-anti-terminator -12.9 1065389 1065433 tattctgtttAGCCACAGGTGCAATTATCAGCGGCGTACGCGAGGCAGGGGCTAatcaggcata
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"