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Name: | glk |
Gene(s): | glk Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified [IC] Inferred by curator |
Reference(s): | [1] Meyer D., et al., 1997 |
Promoter | |
Name: | glkp3 |
+1: | 2509447 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 21 |
Sequence: |
cctttccggcgttgttgttatgcccccaggtatttacagtgtgagaaagaattattttgaCtttagcggagcagttgaaga -10 +1 |
Evidence: |
[COMP-HINF] [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] [RS-EPT-CBR] |
Reference(s): |
[2] Mendoza-Vargas A., et al., 2009 [3] Olvera L., et al., 2009 [4] Salgado H, et al., 2012 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | tttaaaagatTATCGGGAGAGTTACCTCCCGATAtaaaaggaag |
Reference(s): | [1] Meyer D., et al., 1997 |
Name: | glk |
Gene(s): | glk Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified [IC] Inferred by curator |
Reference(s): | [1] Meyer D., et al., 1997 |
Promoter | |
Name: | glkp1 |
+1: | 2509447 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 21 |
Sequence: |
cctttccggcgttgttgttatgcccccaggtatttacagtgtgagaaagaattattttgaCtttagcggagcagttgaaga -10 +1 |
Evidence: |
[COMP-HINF] [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] [RS-EPT-CBR] |
Reference(s): |
[2] Mendoza-Vargas A., et al., 2009 [3] Olvera L., et al., 2009 [4] Salgado H, et al., 2012 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | tttaaaagatTATCGGGAGAGTTACCTCCCGATAtaaaaggaag |
Reference(s): | [1] Meyer D., et al., 1997 |
Name: | glk | ||||||||||
Gene(s): | glk Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified | ||||||||||
Reference(s): | [1] Meyer D., et al., 1997 | ||||||||||
Promoter | |||||||||||
Name: | glkp4 | ||||||||||
+1: | 2509461 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 35 | ||||||||||
Sequence: |
ttacagggagcctgcctttccggcgttgttgttatgcccccaggtatttacagtgtgagaAagaattattttgactttagc -10 +1 |
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Evidence: |
[COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] |
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Reference(s): |
[1] Meyer D., et al., 1997 [3] Olvera L., et al., 2009 |
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Terminator(s) | |||||||||||
Type: | rho-independent | ||||||||||
Sequence: | tttaaaagatTATCGGGAGAGTTACCTCCCGATAtaaaaggaag | ||||||||||
Reference(s): | [1] Meyer D., et al., 1997 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | Cra | repressor | glkp4 | 2509544 | 2509561 | -91.5 | ctgcaattggTGCTGAAACGATAAAGTAattgtgtgac | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS] | W | [1], [5] |
Name: | glk | ||||||||||
Gene(s): | glk Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified | ||||||||||
Reference(s): | [1] Meyer D., et al., 1997 | ||||||||||
Promoter | |||||||||||
Name: | glkp2 | ||||||||||
+1: | 2509461 | ||||||||||
Sigma Factor: | Sigma38 Sigmulon | ||||||||||
Distance from start of the gene: | 35 | ||||||||||
Sequence: |
ttacagggagcctgcctttccggcgttgttgttatgcccccaggtatttacagtgtgagaAagaattattttgactttagc -10 +1 |
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Evidence: |
[COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] |
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Reference(s): |
[1] Meyer D., et al., 1997 [3] Olvera L., et al., 2009 |
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Terminator(s) | |||||||||||
Type: | rho-independent | ||||||||||
Sequence: | tttaaaagatTATCGGGAGAGTTACCTCCCGATAtaaaaggaag | ||||||||||
Reference(s): | [1] Meyer D., et al., 1997 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | Cra | repressor | glkp2 | 2509544 | 2509561 | -91.5 | ctgcaattggTGCTGAAACGATAAAGTAattgtgtgac | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS] | W | [1], [5] |
Reference(s) |
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