RegulonDB RegulonDB 11.1: Operon Form
   

amyA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: amyA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: amyA
Gene(s): amyA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified
Reference(s): [1] Raha M., et al., 1992
Promoter
Name: amyAp
+1: 2006115
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 41
Sequence: gctccgcaggataacctcttttgaatctgaatgagtcgatggctcgcgaataatccgattAcggctacgcttctaatgttc
                           -35                   -10        +1                   
Evidence: [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
Reference(s): [2] Huerta AM., et al., 2003
[1] Raha M., et al., 1992
Terminator(s)
Type: rho-independent
Sequence: gaggtgatttAAATTCATCCCCGGCGGCAAGCCGGGGAGATTTcattacggca
Reference(s): [1] Raha M., et al., 1992


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [COMP-HINF-POSITIONAL-IDENTIFICATION] Human inference of promoter position


Reference(s)    

 [1] Raha M., Kawagishi I., Muller V., Kihara M., Macnab RM., 1992, Escherichia coli produces a cytoplasmic alpha-amylase, AmyA., J Bacteriol 174(20):6644-52

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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