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Name: | acrR | ||||||||||
Gene(s): | acrR Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | In an experiment using increasing concentrations of tetracycline, the transcription of the acrR gene is induced in low concentrations (1.5 and 4 mg/L), but this induction decreases in high concentrations (10 mg/L) Viveiros M, Dupont M, Rodrigues L, Couto I, Davin-Regli A, Martins M, Pagès JM, Amaral L,2007 | ||||||||||
Promoter | |||||||||||
Name: | acrRp | ||||||||||
+1: | 485699 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 62 | ||||||||||
Sequence: |
gatttcaaattggtcaatggtcaaaagttaataaacccattgctgcgtttatattatcgtCgtgctatggtacatacattc -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-AINF-POSITIONAL-IDENTIFICATION] |
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Reference(s): | [1] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | AcrR | repressor | acrRp | 485709 | 485732 | 22.5 | cgtgctatggTACATACATTCACAAATGTATGTAaatctaacgc | nd | [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | C | [2], [3], [4], [5] |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Transcriptional |
Strand: | forward |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -6.8 | 485590 | 485616 | aacgaccgccAGAGGCGTAAACCCTCTGTTTTTGTTcatatgtaaa | |
anti-terminator | -3.8 | 485582 | 485598 | agcatcagaaCGACCGCCAGAGGCGTaaaccctctg | |
anti-anti-terminator | -12.8 | 485539 | 485586 | ggcctgtttgTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACcgccagaggc |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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