RegulonDB RegulonDB 10.10: Operon Form
   

yfeKS operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yfeKS
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: yfeKS
Gene(s): yfeK, yfeS   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITCR] Inferred through co-regulation
Reference(s): [1] Rhodius VA., et al., 2005
Promoter
Name: yfeKp
+1: 2537315
Sigma Factor: Sigma24 Sigmulon
Distance from start of the gene: 27
Sequence: ccgatgatcctcatcgtaatccaaccgaaactttacctgattctggcagtcaaatcggctAtcacaaaacaaggataaggt
                            -35                   -10       +1                   
Evidence: [AIBSCS]
[AIPP]
[ICWHO]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Rhodius VA., et al., 2005


Evidence    

 [AIBSCS] Automated inference based on similarity to consensus sequences

 [AIPP] Automated inference of promoter position

 [ICWHO] Inferred computationally without human oversight

 [TIM] Transcription initiation mapping


Reference(s)    

 [1] Rhodius VA., Suh WC., Nonaka G., West J., Gross CA., 2005, Conserved and variable functions of the sigmaE stress response in related genomes., PLoS Biol 4(1):e2

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [3] Gogol EB., Rhodius VA., Papenfort K., Vogel J., Gross CA., 2011, Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon., Proc Natl Acad Sci U S A 108(31):12875-80

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