RegulonDB RegulonDB 10.9: Operon Form
   

yhjJ operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yhjJ
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: yhjJ
Gene(s): yhjJ   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Promoter
Name: yhjJp
+1: 3682016
Sigma Factor: Sigma24 Sigmulon
Distance from start of the gene: 76
Sequence: tgagttcaggtttatttcacttcttccgtgacattttcatgttcttgcggtctaacacgaAgtgtttttaacgtcatttag
                              -35                  -10      +1                   
Note(s): This promoter appears to be induced in two phases after σE induction. It is induced during the first 5 minutes following σE induction, decreased from 5 to 10 minutes, induced from 10 to 15 minutes, and decreased from 15 to 20 minutes Lacoux C,2020.
Evidence: [AIPP]
[ICWHO]
[TIM]
Reference(s): [1] Huerta AM., et al., 2003
[2] Rhodius VA., et al., 2005


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -20.7 3682060 3682096 tgacccctgtGCCTGAACTTACCACCTGGGTGAGTTCAGGTTTATTtcacttcttc
  anti-terminator -5.0 3682089 3682119 gagtgcgggtGTTTGCGCATAATTGACCCCTGTGCCTGAActtaccacct
  anti-anti-terminator -20.95 3682112 3682179 atggcaaaacGCACGAATTATCCTCTTAATCTCATCACTTATGCCCGCACTCCCTTCCCCGAGTGCGGGTGTTTGCGcataattgac
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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