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Name: | oxyS | ||||||||||
Gene(s): | oxyS Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | The transcription of the gene oxyS is enhanced under high oxygen saturation (300%) Baez A,2013 | ||||||||||
Evidence: | [COMP-AINF-SINGLE-DIRECTON] Automated inference that a single-gene directon is a transcription unit | ||||||||||
Promoter | |||||||||||
Name: | oxySp | ||||||||||
+1: | 4158394 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 0 | ||||||||||
Sequence: |
taggtagaatagcaatgaacgattatccctatcaagcattctgactgataattgctcacaGaaacggagcggcacctcttt -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] |
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Reference(s): |
[1] Huerta AM., et al., 2003 [2] Toledano MB., et al., 1994 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | OxyR | activator | oxySp | 4158431 | 4158447 | -45.0 | cgataggtagAATAGCAATGAACGATTatccctatca | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [2], [3] |
proximal | OxyR | activator | oxySp | 4158453 | 4158469 | -67.0 | ccatcgccacGATAGTTCATGGCGATAggtagaatag | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-RNA-SEQ], [COMP-HINF], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-EXO-MANUAL], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | C | [2], [3], [4] |
Reference(s) |
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