RegulonDB RegulonDB 10.9: Operon Form
   

rpmE operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: rpmE
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: rpmE
Gene(s): rpmE   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit
Promoter
Name: rpmEp1
+1: 4126854
Distance from start of the gene: 159
Sequence: acgtgggcaacgggcatagcatcatcctgacttgaaattcggtgggttagtatacacattGccgtagaagagtgcggatca
Evidence: [IMP]
[TIM]
Reference(s): [1] Aseev LV., et al., 2020
[2] Thomason MK., et al., 2015
Terminator(s)
Type: rho-independent
Sequence: gatttccgaaAAAAGCGCCGCACGGCGCTTTTtttgtgcctg
Reference(s): [1] Aseev LV., et al., 2020


Transcription unit       
Name: rpmE
Gene(s): rpmE   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit
Promoter
Name: rpmEp2
+1: 4126908
Sigma Factor: Sigma32 Sigmulon
Distance from start of the gene: 105
Sequence: cacattgccgtagaagagtgcggatcagtttgcatacgctggttaatttctgtatgatttCgcgccttcgtacgaaatgat
Evidence: [HTTIM]    
[IDA]
[IEP]
Reference(s): [1] Aseev LV., et al., 2020
[3] Mendoza-Vargas A., et al., 2009
[4] Wade JT., et al., 2006
Terminator(s)
Type: rho-independent
Sequence: gatttccgaaAAAAGCGCCGCACGGCGCTTTTtttgtgcctg
Reference(s): [1] Aseev LV., et al., 2020
Allosteric regulation of RNA-polymerase
  Regulator Function Promoter target of RNApol Growth Conditions Note Evidence Reference
  ppGpp inhibition rpmEp2 nd   [GEA] [5]
Evidence: [GEA] Gene expression analysis
Reference(s): [5] Traxler MF., et al., 2008


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -10.8 4126966 4127001 gtggtgtctgGCGTTAGGGCTGGAAGAGCGACGCGGCCTTAAACCgaggttttcc
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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