RegulonDB RegulonDB 11.1: Operon Form

rna operon and associated TUs in Escherichia coli K-12 genome

Name: rna
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: rna
Gene(s): rna   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
Name: rnap
+1: 645034
Distance from start of the gene: 31
Sequence: aatcatcacgcccgccaggtaagcccacctggcgggcttttttatgatttaatagatagtAttcagtgtatgtatgagttc
Reference(s): [1] Mendoza-Vargas A., et al., 2009
[2] Salgado H, et al., 2012

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -23.7 645050 645085 aaatcatcacGCCCGCCAGGTAAGCCCACCTGGCGGGCTTTTTTAtgatttaata
  anti-terminator -5.3 645071 645113 gaactaatacGTTCGCCAAACGCTGAATAAATCATCACGCCCGCCAGGTAAGcccacctggc
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"