RegulonDB RegulonDB 10.8: Operon Form
   

ldrC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ldrC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: ldrC
Gene(s): ldrC   Genome Browser M3D Gene expression COLOMBOS
Note(s): The mRNA produced by the ldrC gene has been observed mainly in the poles of the cell 31540875.
Evidence: [AISDTU] Automated inference that a single-gene directon is a transcription unit


Regulation by sRNA    
  Small RNA name (Regulator) Regulation type Mechanism Function Binding Sites Evidence Reference
LeftPos RightPos Sequence (RNA-strand)
  rdlC antisense translational regulation repressor       [HIFS] [1]
Notes: "The provided sequence is that of the RNA strand,i.e. 'U's are showed instead the 'T'"


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -18.0 1270355 1270392 gaaaccagacACTTCAAGAATAGCCGCAAAATGTTGTCATTACAACAaggcggctat
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"


Reference(s)    

 [1] Kawano M., Oshima T., Kasai H., Mori H., 2002, Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli., Mol Microbiol 45(2):333-49

RegulonDB