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| Operon |  |
|---|---|
| Name: | abgR |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | abgR |
| Gene(s): | abgR Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | The transcription of the abgR gene is induced during the first 24 h after the induction of nitrogen starvation Switzer A, Burchell L, McQuail J, Wigneshweraraj S,2020. |
| Evidence: | [COMP-AINF-SINGLE-DIRECTON] Automated inference that a single-gene directon is a transcription unit |
| Terminator(s) | |
| Type: | rho-independent |
| Sequence: | ctgcataaaaAAATAGAGTCTGTCGACATCCGCCAGACTCTAcagtacacac |
| Reference(s): | [1] Thomason MK., et al., 2012 |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Translational |
| Strand: | forward |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -12.1 | 1404695 | 1404740 | attaaagtagATGCCAGTTTCTTTGGTCTGATAAATAACGGTTATCGGTGGCGTCatggcttttc |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
[1] Thomason MK., Fontaine F., De Lay N., Storz G., 2012, A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli., Mol Microbiol 84(1):17-35