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Name: | feaB |
Gene(s): | feaB Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Zaslaver A., et al., 2006 |
Promoter | |
Name: | feaBp2 |
+1: | 1447370 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 149 |
Sequence: |
tttttattgttgcatttgtgttgcaataaacgaagctaatgagcctgactataggaaataAgtcttgtcaggcatagagac -35 -10 +1 |
Evidence: |
[IHBCE] [TIM] |
Reference(s): | [2] Zeng J., et al., 2013 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | gctcataagtAAAAAACGGCACCTGGTGCCGTTTTTTtgtctgaaac |
Reference(s): | [3] Ferrandez A., et al., 1997 |
Name: | feaB | |||||||||
Gene(s): | feaB Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | The expression of tynA is activated in carbon- and nitrogen-limited cells in the presence of a FeaR coactivator Zeng J,2013. During carbon limitation in the presence of the FeaR coactivators (glycerol medium plus tyramine/PEA), both tynA and feaB are upregulated Zeng J,2013. tynA, feaB, and fliA promoters are strongly repressed when the nsrR start codon from the wild-type GUG is changed to AUG Chhabra S,2015 |
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Evidence: | [AISGDTU] Automated inference that a single-gene directon is a transcription unit [BTEI] Boundaries of transcription experimentally identified |
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Reference(s): | [1] Zaslaver A., et al., 2006 | |||||||||
Promoter | ||||||||||
Name: | feaBp1 | |||||||||
+1: | 1447492 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 27 | |||||||||
Sequence: |
gacaaagcgaatgtcacagcgaaaaaagtgacttttcttgtcgctgcgtacactgaaatcAcactgggtaaataataagga -35 -10 +1 |
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Note(s): | Zaslaver et al. demonstrated in 2006, by means of a library of fluorescent transcription fusions, that this promoter can be transcribed in vitro Zaslaver A,2006. | |||||||||
Evidence: |
[IHBCE] [TIM] |
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Reference(s): |
[3] Ferrandez A., et al., 1997 [1] Zaslaver A., et al., 2006 [2] Zeng J., et al., 2013 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | feaBp1 | 1447410 | 1447431 | -71.5 | tattgtcacgATTTGCGGAGCTTGTCACAGCTgacaaagcga | nd | [APIORCISFBSCS], [GEA], [APIORCISFBSCS] | [6] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | FeaR | activator | feaBp1 | 1447418 | 1447438 | -64.0 | cgatttgcggAGCTTGTCACAGCTGACAAAGcgaatgtcac | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [2], [7] |
proximal | FeaR | activator | feaBp1 | 1447439 | 1447459 | -43.0 | gctgacaaagCGAATGTCACAGCGAAAAAAGtgacttttct | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | NsrR | repressor | feaBp1 | 1447303 | 1447314 | -184.0 | tcgctctgtgAAATGTATTTTTattgttgcat | nd | [GEA], [APIORCISFBSCS] | [4], [5] |
Reference(s) |
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