RegulonDB RegulonDB 10.9: Operon Form

nlpA operon and associated TUs in Escherichia coli K-12 genome

Name: nlpA
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: nlpA
Gene(s): nlpA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit
Name: nlpAp
+1: 3840017
Distance from start of the gene: 24
Sequence: tattcttatcgatagcgtttcgttttttaaaccgcagcgaccttaccgctatagtcaggtAatcattaataaaaggataaa
Evidence: [RS-EPT-CBR]
Reference(s): [1] Bodero MD., et al., 2007
[2] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CsgD activator nlpAp 3840087 3840101 -76.5 gtgccagactTTATATTCCACTTTTattccttttt nd [APIORCISFBSCS], [BPP], [GEA] [4]
proximal CsgD activator nlpAp 3840102 3840116 -91.5 cgtggtcagtAAGAAGTGCCAGACTttatattcca nd [BPP], [GEA] [4]
sRNA Interaction TU
sRNA TU Regulated Function Binding Sites Regulatory Mechanism Evidence (Confirmed, Strong, Weak) Reference(s)
PosLeft PosRight Target sequence (mRNA)
small regulatory RNA GcvB nlpA repressor 3839961 3839970 CCCUGUCCGU MRNA-DEGRADATION [IEP], [NABE] [3]