RegulonDB RegulonDB 10.10: Operon Form
   

ydeJ operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ydeJ
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ydeJ
Gene(s): ydeJ   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit
Promoter
Name: ydeJp
+1: 1624688
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 85
Sequence: atttaactcactaaagttaagaagattgaaaagtcttaaacatattttcagaataatcggAtttatatgtttgaaaattat
                          -35                       -10     +1                   
Evidence: [AIPP]
[ICWHO]
Reference(s): [1] Huerta AM., et al., 2003
TF binding sites (TFBSs)
[FNR,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote FNR activator ydeJp 1624277 1624290 -404.5 gtcctctcctTTGTGAGAAATCAAattaccgcgt nd [AIBSCS] [2]


Evidence    

 [AIPP] Automated inference of promoter position

 [ICWHO] Inferred computationally without human oversight

 [AIBSCS] Automated inference based on similarity to consensus sequences


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Partridge JD., Scott C., Tang Y., Poole RK., Green J., 2006, Escherichia coli transcriptome dynamics during the transition from anaerobic to aerobic conditions., J Biol Chem 281(38):27806-15

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