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|
| Operon |  |
|---|---|
| Name: | ydiY |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | ydiY |
| Gene(s): | ydiY Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | Under NlpE outer membrane lipoprotein overexpression, the transcription of the ydiY gene is decreased Raivio TL,2013 |
| Evidence: | [AISGDTU] Automated inference that a single-gene directon is a transcription unit |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | reverse |
| Evidence: | [ICA] Inferred by computational analysis |
| Reference(s): | [1] Merino E, et al., 2005 |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -7.0 | 1806101 | 1806127 | gaaagtttccGGGACCGCGATGGTCTCTTTTTTTGTtgtacggact | |
| anti-terminator | -9.7 | 1806124 | 1806165 | tcgttaccttTCCAGGGACGCTAATCTTTGATCCTTAAGAAAGTTTCCGGGaccgcgatgg | |
| anti-anti-terminator | -4.6 | 1806151 | 1806194 | ttgctaagttATTCGCGCCTTTTTATAATTCGTTACCTTTCCAGGGACGCTAAtctttgatcc |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
[1] Merino E, Yanofsky C., 2005, Transcription attenuation: a highly conserved regulatory strategy used by bacteria., Trends Genet. 2005 May;21(5):260-4.