RegulonDB RegulonDB 10.10: Operon Form

ydiY operon and associated TUs in Escherichia coli K-12 genome

Name: ydiY
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: ydiY
Gene(s): ydiY   Genome Browser M3D Gene expression COLOMBOS
Note(s): Under NlpE outer membrane lipoprotein overexpression, the transcription of the ydiY gene is decreased Raivio TL,2013
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [1] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -7.0 1806101 1806127 gaaagtttccGGGACCGCGATGGTCTCTTTTTTTGTtgtacggact
  anti-terminator -9.7 1806124 1806165 tcgttaccttTCCAGGGACGCTAATCTTTGATCCTTAAGAAAGTTTCCGGGaccgcgatgg
  anti-anti-terminator -4.6 1806151 1806194 ttgctaagttATTCGCGCCTTTTTATAATTCGTTACCTTTCCAGGGACGCTAAtctttgatcc
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"