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Name: | yjjZ | ||||||||||
Gene(s): | yjjZ Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [COMP-AINF-SINGLE-DIRECTON] Automated inference that a single-gene directon is a transcription unit | ||||||||||
Promoter | |||||||||||
Name: | yjjZp | ||||||||||
+1: | 4605777 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 27 | ||||||||||
Sequence: |
cccgatagcaagggatttatctggcttgcaaatgataaaaattatcatatgatattggttAtcattatcaatgaaagagat -35 -10 +1 |
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Note(s): | The yjjZp promoter is significantly affected by ectopic production of a nanoRNase during stationary-phase growth Vvedenskaya IO,2012 | ||||||||||
Evidence: |
[COMP-AINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[1] Vassinova N., et al., 2000 [2] Vvedenskaya IO., et al., 2012 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | Fur-Fe2+ | repressor | yjjZp | 4605741 | 4605759 | -27.0 | atttatctggCTTGCAAATGATAAAAATTatcatatgat | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | S | [1], [5], [6], [7], [8] |
proximal | Fur-Fe2+ | repressor | yjjZp | 4605770 | 4605788 | 3.0 | atcatatgatATTGGTTATCATTATCAATgaaagagatg | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | S | [1], [5], [6], [7], [8] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | OxyR | activator | yjjZp | 4605707 | 4605723 | -62.0 | taatcatagcGATAGGTTTACCCGATAgcaagggatt | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-RNA-SEQ], [COMP-HINF], [EXP-CHIP-EXO-MANUAL] | C | [3], [4] |
Reference(s) |
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