RegulonDB RegulonDB 11.2: Operon Form

yncE operon and associated TUs in Escherichia coli K-12 genome

Name: yncE
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: yncE
Gene(s): yncE   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF-SINGLE-DIRECTON] Automated inference that a single-gene directon is a transcription unit
Name: yncEp
+1: 1523227
Distance from start of the gene: 80
Sequence: gtagtcgtaacggcaagaaatgctccacatttgagaaaataatgattaccattcccatttAtaacaagagcgtaacgatga
Reference(s): [1] Mendoza-Vargas A., et al., 2009
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal MarA activator yncEp 1523176 1523196 -41.5 tgtagtcgtaACGGCAAGAAATGCTCCACATttgagaaaat nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [2]