RegulonDB RegulonDB 10.9: Operon Form
   

gpmA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: gpmA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: gpmA
Gene(s): gpmA   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: gpmAp4
+1: 787632
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 37
Sequence: tattttcgctatggttatgcgtaagcattgctgttgcttcgtcgcggcaatataatgagaAttattatcattaaaagatga
                           -35                    -10       +1                   
Evidence: [AIPP]
[HTTIM]
[RS-EPT-CBR]
Reference(s): [1] Olvera L., et al., 2009
[2] Salgado H, et al., 2012
[3] Vassinova N., et al., 2000
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal Fur-Fe2+ repressor gpmAp4 787618 787636 6.0 ggcaatataaTGAGAATTATTATCATTAAAagatgatttg nd [AIBSCS], [GEA] [3]
proximal Fur-Fe2+ repressor gpmAp4 787621 787639 3.0 cgcggcaataTAATGAGAATTATTATCATTaaaagatgat nd [AIBSCS], [APIORCISFBSCS], [BPP], [GEA] [3], [5]
sRNA Interaction TU
sRNA TU Regulated Function Binding Sites Regulatory Mechanism Evidence (Confirmed, Strong, Weak) Reference(s)
PosLeft PosRight Target sequence (mRNA)
small regulatory RNA FnrS gpmA repressor 787592 787608 CCAUAUACUUACUCCUC nd [IEP], [SM] [4]


Transcription unit          
Name: gpmA
Gene(s): gpmA   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: gpmAp
+1: 787632
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 37
Sequence: tattttcgctatggttatgcgtaagcattgctgttgcttcgtcgcggcaatataatgagaAttattatcattaaaagatga
                           -35                    -10       +1                   
Evidence: [AIPP]
[HTTIM]
[RS-EPT-CBR]
Reference(s): [1] Olvera L., et al., 2009
[2] Salgado H, et al., 2012
[3] Vassinova N., et al., 2000
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal Fur-Fe2+ repressor gpmAp 787618 787636 6.0 ggcaatataaTGAGAATTATTATCATTAAAagatgatttg nd [AIBSCS], [GEA] [3]
proximal Fur-Fe2+ repressor gpmAp 787621 787639 3.0 cgcggcaataTAATGAGAATTATTATCATTaaaagatgat nd [AIBSCS], [APIORCISFBSCS], [BPP], [GEA] [3], [5]
sRNA Interaction TU
sRNA TU Regulated Function Binding Sites Regulatory Mechanism Evidence (Confirmed, Strong, Weak) Reference(s)
PosLeft PosRight Target sequence (mRNA)
small regulatory RNA FnrS gpmA repressor 787592 787608 CCAUAUACUUACUCCUC nd [IEP], [SM] [4]


Transcription unit       
Name: gpmA
Gene(s): gpmA   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: gpmAp3
+1: 787670
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 75
Sequence: tgcaactcaatattcacaacaaccttacactgcgccactattttcgctatggttatgcgtAagcattgctgttgcttcgtc
                                               -10          +1                   
Evidence: [HTTIM]
[RS-EPT-CBR]
Reference(s): [1] Olvera L., et al., 2009
[2] Salgado H, et al., 2012


Transcription unit       
Name: gpmA
Gene(s): gpmA   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: gpmAp2
+1: 787670
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 75
Sequence: tgcaactcaatattcacaacaaccttacactgcgccactattttcgctatggttatgcgtAagcattgctgttgcttcgtc
                                               -10          +1                   
Evidence: [HTTIM]
[RS-EPT-CBR]
Reference(s): [1] Olvera L., et al., 2009
[2] Salgado H, et al., 2012





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