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| Operon |  |
|---|---|
| Name: | ydgK-rsxABCDGE-nth |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | ydgK-rsxABCDGE-nth |
| Gene(s): | ydgK, rsxA, rsxB, rsxC, rsxD, rsxG, rsxE, nth Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | The transcription of the rsxPABCDGE operon ends 16 bp downstream of the nth gene, where there is a putative rho-dependent terminator Gifford CM,2000. |
| Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined |
| Reference(s): | [1] Gifford CM., et al., 2000 |
| Promoter | |
| Name: | ydgKp |
| +1: | 1705207 |
| Distance from start of the gene: | 43 |
| Sequence: |
tggcactatgtccaataaagaaagtagcgatcggttataaaagccttataataacgccccTaaaattagatttgcctgttt |
| Evidence: | [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
| Reference(s): | [1] Gifford CM., et al., 2000 |
| Name: | rsxABCDGE-nth |
| Gene(s): | rsxA, rsxB, rsxC, rsxD, rsxG, rsxE, nth Genome Browser M3D Gene expression COLOMBOS |
| Reference(s): | [1] Gifford CM., et al., 2000 |
| Promoter | |
| Name: | rsxAp |
| +1: | 1705755 |
| Distance from start of the gene: | 12 |
| Sequence: |
cttacagttaacctgttgtcgcctgctctggattaacggataataggcggcttttttattTcaggccgaaaaatgactgac |
| Evidence: | [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
| Reference(s): | [1] Gifford CM., et al., 2000 |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | forward |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -15.0 | 1705712 | 1705755 | taacctgttgTCGCCTGCTCTGGATTAACGGATAATAGGCGGCTTTTTTATTTcaggccgaaa | |
| terminator | -9.9 | 1705074 | 1705119 | gtatcgtgctGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTgacctcggcc | |
| anti-terminator | -5.35 | 1705682 | 1705728 | acgtttgtgaATCCGTAATAACCTTACAGTTAACCTGTTGTCGCCTGCTCTGGATTaacggataat | |
| anti-terminator | -9.2 | 1705070 | 1705096 | atatgtatcgTGCTGCCGATCACCGTCGCGCAGAGCtggtttctgg | |
| anti-anti-terminator | -8.1 | 1705037 | 1705082 | attacaccctGACGGACGATCAGGAACTGATCAATATGTATCGTGCTGCCGATCAccgtcgcgca |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping