RegulonDB RegulonDB 10.9: Operon Form

ryhB operon and associated TUs in Escherichia coli K-12 genome

Name: ryhB
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: ryhB
Gene(s): ryhB   Genome Browser M3D Gene expression COLOMBOS
Note(s): The RNA produced by the ryhB gene has been observed mainly in the poles of the cell during stress conditions 31540875.
Evidence: [ICWHO] Inferred computationally without human oversight
[LTED] Length of transcript experimentally determined
Reference(s): [1] Argaman L., et al., 2001
Name: yhhXp5
+1: 3581016
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 0
Sequence: aatgcatttttttgcaaaaagtgttggacaagtgcgaatgagaatgattattattgtctcGcgatcaggaagaccctcgcg
                        -35                      -10        +1                   
Note(s): Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.02. P-value: 5.170e-5
Evidence: [HTTIM]
Reference(s): [2] Huerta AM., et al., 2003
[3] Liu F., et al., 2018
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal Fur-Fe2+ repressor yhhXp5 3581019 3581037 -12.0 caagtgcgaaTGAGAATGATTATTATTGTCtcgcgatcag nd [AIBSCS], [GEA] [4], [5]
proximal Fur-Fe2+ repressor yhhXp5 3581022 3581040 -15.0 ggacaagtgcGAATGAGAATGATTATTATTgtctcgcgat nd [APIORCISFBSCS], [BPP] [6]
proximal Fur-Fe2+ repressor yhhXp5 3581025 3581043 -18.0 gttggacaagTGCGAATGAGAATGATTATTattgtctcgc nd [AIBSCS], [APIORCISFBSCS], [GEA] [4], [5]