RegulonDB RegulonDB 11.1: Operon Form
   

ykiA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ykiA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ykiA
Gene(s): ykiA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
Promoter
Name: ykiAp
+1: 408574
Distance from start of the gene: 35
Sequence: tagcccataataatatttcctttgctgcgattttttcaatttccgatatattcataatttAtcaaggttgatataaatatc
Evidence: [EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [1] Salscheider SL., et al., 2014
TF binding sites (TFBSs)
[RcsB-BglJ,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal RcsB-BglJ activator ykiAp 408486 408506 -78.5 cttgaacgggAGGGCATTTTTCTGAAATATCctttctttag nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [1]


Evidence    

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping

 [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis

 [COMP-AINF-SIMILAR-TO-CONSENSUS] Automated inference based on similarity to consensus sequences


Reference(s)    

 [1] Salscheider SL., Jahn A., Schnetz K., 2014, Transcriptional regulation by BglJ-RcsB, a pleiotropic heteromeric activator in Escherichia coli., Nucleic Acids Res 42(5):2999-3008

RegulonDB