RegulonDB RegulonDB 10.8: Operon Form
   

ymgGD operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ymgGD
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Gene(s): ymgD, ymgG   Genome Browser M3D Gene expression COLOMBOS
Note(s): The expression of this operon is increased when colicin (at 30 ng/ml) is added to the medium 23421615.
Evidence: [ICWHO] Inferred computationally without human oversight


Regulation by sRNA    
  Small RNA name (Regulator) Regulation type Mechanism Function Binding Sites Evidence Reference
LeftPos RightPos Sequence (RNA-strand)
  gcvB unknown unknown repressor       [IMP] [1]
Notes: "The provided sequence is that of the RNA strand,i.e. 'U's are showed instead the 'T'"


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -6.7 1222923 1222936 ttctgctccaCGCCAGCGATGGCggatatgaac
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"


Reference(s)    

 [1] Pulvermacher SC., Stauffer LT., Stauffer GV., 2009, Role of the sRNA GcvB in regulation of cycA in Escherichia coli., Microbiology 155(Pt 1):106-14

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