RegulonDB RegulonDB 10.9: Operon Form

ybfP operon and associated TUs in Escherichia coli K-12 genome

Name: ybfP
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: ybfP
Gene(s): ybfP   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
Evidence: [ICA] Inferred by computational analysis
Reference(s): [1] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -18.9 715216 715243 aataaaaaaaGGGCGGTCGCAAGATCGCCCTTTTTTAcgtatgacaa
  anti-terminator -7.87 715176 715226 agattgttagCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCaagatcgccc
  anti-anti-terminator -5.5 715160 715194 gagaaagaagCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCgtaaacacat
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"