Name: |
ptrA-recBD |
Gene(s): |
recD, recB, ptrA
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
The transcript of ptrA is increased after σE induction, as observed in high-throughput analysis of gene expression Lacoux C,2020.
|
Evidence: |
[ICWHO] Inferred computationally without human oversight |
Promoter |
|
Name: |
ptrAp |
+1: |
2959011 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
127
|
Sequence: |
aatcagtcatgagtgctgtataaaaattgcgcaatctatccgcttactttatgatgcgcaCcagtcacggactgatggtta -35 -10 +1
|
Note(s): |
A potential σ54 or putative nitrogen-regulated (CTGGCAGATGATTTGCG) promoter is located downstream from the -35 and -10 regions of ptrAp Claverie-Martin F,1987. However, whether this promoter is functional in vivo has not been determined Claverie-Martin F,1987. |
Evidence: |
[TIM]
|
Reference(s): |
[1] Claverie-Martin F., et al., 1987
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
proximal |
LexA
|
repressor |
ptrAp |
2958982
|
2959001
|
20.5
|
ccagtcacggACTGATGGTTATATAAACATaggctgactc |
nd
|
[BPP], [SM]
|
[2]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
LexA |
repressor |
ptrAp |
2958982
|
2959001
|
20.5
|
ccagtcacggACTGATGGTTATATAAACATaggctgactc
|
nd
|
[2]
|