|
|
| Operon |  |
|---|---|
| Name: | map-glnD-dapD |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | dapD |
| Gene(s): | dapD Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [LTED] Length of transcript experimentally determined |
| Reference(s): |
[1] Bouvier J., et al., 1992 [2] Richaud C., et al., 1984 |
| Promoter | |
| Name: | dapDp |
| +1: | 185977 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 30 |
| Sequence: |
ttgcagcaggaagtgcatcagcggttgacagaggccctcaatccaaacgataaagggtgaTgtgtttactgatatgaaaag -35 -10 +1 |
| Evidence: |
[ICWHO] [RS-EPT-CBR] [TIM] |
| Reference(s): |
[3] Huerta AM., et al., 2003 [2] Richaud C., et al., 1984 [4] Salgado H, et al., 2012 |
| Terminator(s) | |
| Type: | rho-independent |
| Sequence: | tgcaaaaaaaTCGGGCAGCGTCGTGCTGCCCGtgtgcatact |
| Reference(s): | [2] Richaud C., et al., 1984 |
| Name: | glnD |
| Gene(s): | glnD Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | Under nitrogen-rich growth conditions, the expression of the glnD gene increased in mutants for two genes that encode two terminal oxidases, cyoA and cydB, and in mutants for two transcriptional regulators, Fnr and Fur. However, under nitrogen-limited growth conditions, gene expression was decreased in the Fnr mutant Kumar R,2011 |
| Evidence: | [LTED] Length of transcript experimentally determined |
| Reference(s): | [6] van Heeswijk WC., et al., 1993 |
| Promoter | |
| Name: | glnDp |
| +1: | 188655 |
| Distance from start of the gene: | 5 |
| Sequence: |
ataagatgaagccggcgaatgccggcttttttaatgcgataatttaatcttatgggtggcGcacaatgaatacccttccag |
| Evidence: | [TIM] |
| Reference(s): | [6] van Heeswijk WC., et al., 1993 |
| Name: | map-glnD-dapD |
| Gene(s): | dapD, glnD, map Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | Activation of the SoxS and Rob regulators of the map-glnD-dapD operon was observed after treatment with paraquat and dipyridyl Martin RG,2002, and activation by MarA was observed after treatment with sodium salicylate Pomposiello PJ,2001. Blanchard JL, Wholey WY, Conlon EM, Pomposiello PJ,2007. |
| Evidence: | [ICWHO] Inferred computationally without human oversight |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | reverse |
| Evidence: | [ICA] Inferred by computational analysis |
| Reference(s): | [8] Merino E, et al., 2005 |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -12.9 | 188683 | 188706 | aataagatgaAGCCGGCGAATGCCGGCTTTTTTaatgcgataa | |
| terminator | -9.5 | 189634 | 189669 | ccaataattgTTGGCGCTGTGTACAGCATCAGACGTCGAATTTTCtattatagaa | |
| anti-terminator | -12.3 | 188698 | 188740 | gatgacaccaTCCCGGCGATAATCTCGCACGACGAATAAGATGAAGCCGGCGaatgccggct | |
| anti-terminator | -9.9 | 189658 | 189693 | tataccacaaATACGTCGTGGACACCAATAATTGTTGGCGCTGTGtacagcatca | |
| anti-anti-terminator | -14.2 | 188722 | 188774 | tgataacggcTGCGAAATTCTGACGCTACGCAAGGATGACACCATCCCGGCGATAATCTCGCacgacgaata | |
| anti-anti-terminator | -8.4 | 189678 | 189720 | gaaatggatcGGAAGTCCGGCGCGCTTTATACCACAAATACGTCGTGGACACcaataattgt |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
| Reference(s) |
|
|---|---|
[ICWHO] Inferred computationally without human oversight