RegulonDB RegulonDB 10.10: Operon Form
   

xdhABC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: xdhABC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: xdhABC
Gene(s): xdhA, xdhB, xdhC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: xdhAp1
+1: 3000257
Distance from start of the gene: 88
Sequence: tcacacttcctacctcccctaacgcttatcgtcgtttctggcgtaaatcttgcctgcttaGactaaatctttgccataaga
Evidence: [TIM]
Reference(s): [1] Xi H., et al., 2000
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd FNR activator xdhAp1 nd nd nd nd nd [GEA], [BPP] [2]


Transcription unit       
Name: xdhABC
Gene(s): xdhA, xdhB, xdhC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: xdhAp2
+1: 3000265
Sigma Factor: Sigma54 Sigmulon
Distance from start of the gene: 80
Sequence: cctacctcccctaacgcttatcgtcgtttctggcgtaaatcttgcctgcttagactaaatCtttgccataagaaccaaatg
                               -24         -12              +1                   
Evidence: [HIPP]
[IEP]
[IHBCE]
[TIM]
Reference(s): [1] Xi H., et al., 2000
[3] Zhao K., et al., 2010





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