RegulonDB RegulonDB 10.9: Operon Form
   

pepA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: pepA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: pepA
Gene(s): pepA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: pepAp3
+1: 4486101
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 150
Sequence: taaacgtcatttattctcttgagtcgtcgaaatcgtcgctaagataattatactcaacggAttcacctctcagattttgtt
                          -35                    -10        +1                   
Evidence: [ICWHO]
[RS-EPT-CBR]
[TIM]
Reference(s): [1] Charlier D., et al., 1995
[2] Huerta AM., et al., 2003
[3] Salgado H, et al., 2012


Transcription unit       
Name: pepA
Gene(s): pepA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: pepAp2
+1: 4486112
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 161
Sequence: gtttcatggcttaaacgtcatttattctcttgagtcgtcgaaatcgtcgctaagataattAtactcaacggattcacctct
                              -35                  -10      +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [1] Charlier D., et al., 1995
[2] Huerta AM., et al., 2003


Transcription unit          
Name: pepA
Gene(s): pepA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: pepAp1
+1: 4486139
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 188
Sequence: aactcgtcttttgcaggattttagcttgtttcatggcttaaacgtcatttattctcttgaGtcgtcgaaatcgtcgctaag
                          -35                     -10       +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [1] Charlier D., et al., 1995
[2] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal PepA repressor pepAp1 4486169 4486195 -43.0 ccgtaaaaacTCGTCTTTTGCAGGATTTTAGCTTGTTTcatggcttaa nd [BPP] [1]





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