RegulonDB RegulonDB 10.10: Operon Form
   

ypfM operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ypfM
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: ypfM
Gene(s): ypfM   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit
Promoter
Name: ypfMp
+1: 2590970
Distance from start of the gene: 104
Sequence: tatctcgaaatgttgctgtgtatcacatacaaatcatcaccgcaggaccatagtatttacAtaagatttgtcccccggagg
Evidence: [HTTIM]
[RS-EPT-CBR]
Reference(s): [1] Raghavan R., et al., 2011
[2] Salgado H, et al., 2012


Evidence    

 [HTTIM] High-throughput transcription initiation mapping

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Raghavan R., Sage A., Ochman H., 2011, Genome-wide identification of transcription start sites yields a novel thermosensing RNA and new cyclic AMP receptor protein-regulated genes in Escherichia coli., J Bacteriol 193(11):2871-4

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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