RegulonDB RegulonDB 10.9: Operon Form

yjbQR operon and associated TUs in Escherichia coli K-12 genome

Name: yjbQR
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: yjbQR
Gene(s): yjbQ, yjbR   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: yjbQp
+1: 4270214
Distance from start of the gene: 24
Sequence: cgaatgctgtttttttaatcacacctttatcctttcgctgtcttgctgcaaactgattaaGagagttttatcaaggagcag
Evidence: [HTTIM]    
Reference(s): [1] Mendoza-Vargas A., et al., 2009
Type: rho-independent
Reference(s): [2] Feng CQ., et al., 2019
[3] Lesnik EA., et al., 2001
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal GadE activator yjbQp 4270164 4270183 -40.0 cgaatgctgtTTTTTTAATCACACCTTTATCctttcgctgt nd [CEEUMA], [IHBCE], [RSE] [4]

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -23.3 4270126 4270170 cagaatactgACAGAGCGGGAGAGCGTGATGCTCTCCCGAATGCTGTTTTTTTAatcacacctt
  anti-terminator -5.1 4270104 4270141 ggtgaagaggTGATCGTCAATTCAGAATACTGACAGAGCGGGAGAGCgtgatgctct
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"