RegulonDB RegulonDB 10.10: Operon Form

yhdV operon and associated TUs in Escherichia coli K-12 genome

Name: yhdV
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: yhdV
Gene(s): yhdV   Genome Browser M3D Gene expression COLOMBOS
Note(s): The transcription of the yhdV gene is induced during the first 24 h after the induction of nitrogen starvation Switzer A, Burchell L, McQuail J, Wigneshweraraj S,2020.
Evidence: [ICWHO] Inferred computationally without human oversight

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -12.4 3418148 3418177 tcagaaacatAAAGGCGCTTTCGGGTGCCTTTATTATTTccagtgaaac
  anti-terminator -6.1 3418112 3418161 tctttgtggtGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGggtgccttta
  anti-anti-terminator -8.56 3418089 3418138 ggcaatcttcTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAAtcagaaacat
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"