RegulonDB RegulonDB 10.10: Operon Form
   

dinD operon and associated TUs in Escherichia coli K-12 genome


Transcription unit          
Name: dinD
Gene(s): dinD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: dinDp
+1: 3817699
Distance from start of the gene: 61
Sequence: ctgctccagattttgcgatgtttttttgcccagcacactgagaacgtgagatactcacaaCtgtatataaatacagttaca
Evidence: [IHBCE]
[TIM]
Reference(s): [1] Poulsen P., et al., 1989
TF binding sites (TFBSs)
[LexA,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal LexA repressor dinDp 3817697 3817716 8.5 agatactcacAACTGTATATAAATACAGTTacagatttac nd [GEA], [AIBSCS], [APIORCISFBSCS] [2]


Evidence    

 [IHBCE] Inferred by a human based on computational evidence

 [TIM] Transcription initiation mapping

 [GEA] Gene expression analysis

 [AIBSCS] Automated inference based on similarity to consensus sequences

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.


Reference(s)    

 [1] Poulsen P., Andersen JT., Jensen KF., 1989, Molecular and mutational analysis of three genes preceding pyrE on the Escherichia coli chromosome., Mol Microbiol 3(3):393-404

 [2] Ohmori H., Saito M., Yasuda T., Nagata T., Fujii T., Wachi M., Nagai K., 1995, The pcsA gene is identical to dinD in Escherichia coli., J Bacteriol 177(1):156-65

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