RegulonDB RegulonDB 10.9: Operon Form
   

yfgG operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yfgG
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: yfgG
Gene(s): yfgG   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: yfgGp
+1: 2629252
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 38
Sequence: tgacgcttttttacataacgaagaattgaccattttgtcctgttgtgccttaatgtaagtAccgtccacagcgtgggacat
                          -35                    -10        +1                   
Evidence: [HTTIM]
[ICWHO]
[RS-EPT-CBR]
[TIM]
Reference(s): [1] Druzhinin SY., et al., 2015
[2] Huerta AM., et al., 2003
[3] Raghavan R., et al., 2011
[4] Salgado H, et al., 2012
[5] Vvedenskaya IO., et al., 2012




Reference(s)    

 [1] Druzhinin SY., Tran NT., Skalenko KS., Goldman SR., Knoblauch JG., Dove SL., Nickels BE., 2015, A Conserved Pattern of Primer-Dependent Transcription Initiation in Escherichia coli and Vibrio cholerae Revealed by 5' RNA-seq., PLoS Genet 11(7):e1005348

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [3] Raghavan R., Sage A., Ochman H., 2011, Genome-wide identification of transcription start sites yields a novel thermosensing RNA and new cyclic AMP receptor protein-regulated genes in Escherichia coli., J Bacteriol 193(11):2871-4

 [4] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [5] Vvedenskaya IO., Sharp JS., Goldman SR., Kanabar PN., Livny J., Dove SL., Nickels BE., 2012, Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs., Genes Dev 26(13):1498-507


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