RegulonDB RegulonDB 10.8: Operon Form
   

sbmC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: sbmC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: sbmC
Gene(s): sbmC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: sbmCp2
+1: 2081303
Distance from start of the gene: 41
Sequence: actggcaggagtgcgagtctgctcgcataatcaacactcattccttgtggttttaattttGcaactatactgtatataaaa
Note(s): sbmCp2 belongs to the group of promoters under control of CRP and Sxy, called CRP-S (Sxy-dependent CRP sites) Cameron AD,2006
Evidence: [HTIM]
Reference(s): [1] Mendoza-Vargas A., et al., 2009
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP activator sbmCp2 2081334 2081355 -41.5 agactggcagGAGTGCGAGTCTGCTCGCATAAtcaacactca nd [AIBSCS], [BPP], [IHBCE] [2], [3]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal LexA repressor sbmCp2 2081277 2081296 17.5 tttgcaactaTACTGTATATAAAAACAGTAtcaatggagg nd [CV(GEA/ROMA)], [GEA], [IHBCE] [2]


Transcription unit       
Name: sbmC
Gene(s): sbmC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: sbmCp1
+1: 2081325
Distance from start of the gene: 63
Sequence: cctgacctttcttttgcagcagactggcaggagtgcgagtctgctcgcataatcaacactCattccttgtggttttaattt
Evidence: [HTIM]
Reference(s): [1] Mendoza-Vargas A., et al., 2009





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